Hello Ambichan,
SAP fixed the issue of report painter programs with OSS Note 151748. This note is already included in SAP releases higher than 4.6C.
SAP however didn't fix the issue of SAP Query related programs, e.g. if users execute queries via SQ01 or SQVI the Query usage is not capture but the usage of the executed transaction.
The issue can be fixed if you include SQ01 and SQVI as described in OSS Note 151748 if your users are in fact using those transaction for SAP queries. The correction will not change any historic usage statistics though, e.g. it will only work moving forward.
If your SAP queries are included in a report tree or the SAP menu you typically will see y transactions used to execute the queries.
RBE Plus can show the queries behind those y transactions.
Best Regards,
Heiko